/EXTERNAL BLUEPRINT/methylation/K006373_15_lane_gembs

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SAMPLE K006373_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26792596 24136231 90.09 %
NonRefCpG 255642 192168 75.17 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006373_15_lane_gembs_coverage_refCpG.png ./IMG//K006373_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006373_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006373_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006373_15_lane_gembs_quality_refcpg.png ./IMG//K006373_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006373_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8249152 15.60 % 7273823 14.73 % 61433 12.63 % 39100 9.76 %
Intermediate (0.3-0.7) 9456389 17.88 % 8409223 17.03 % 99659 20.48 % 72626 18.14 %
Methylated (0.7-1) 35175099 66.52 % 33685297 68.23 % 325427 66.89 % 288702 72.10 %
Median Methylation 0.840 0.850 0.830 0.860