/EXTERNAL BLUEPRINT/K006421_12_lane_gembs

BACK

SAMPLE K006421_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1189974908 100.00 % 594987454 100.00 % 594987454 100.00 %
General Reads 1161410215 97.60 % 583196027 98.02 % 578214188 97.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4404067 0.37 % 2210222 0.37 % 2193845 0.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24160626 2.03 % 9581205 1.61 % 14579421 2.45 %
Bisulfite_reads C2T 596898012 50.16 % 299707454 50.37 % 297190558 49.95 %
Bisulfite_reads G2A 568916270 47.81 % 285698795 48.02 % 283217475 47.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 494631416
Average Unique 83.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 47194935342 38.88 % 18022374624 29.70 % 29172560718 48.07 %
Base Counts Overall C 12985980981 10.70 % 540098544 0.89 % 12445882437 20.51 %
Base Counts Overall G 13107820339 10.80 % 12591794196 20.75 % 516026143 0.85 %
Base Counts Overall T 46848944830 38.60 % 28935981435 47.68 % 17912963395 29.52 %
Base Counts Overall N 1239759124 1.02 % 598471509 0.99 % 641287615 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992852185600174
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 567001380



Mapping Quality

Mapping Quality Histogram
K006421_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006421_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
2392MCL.Bisulfite-Seq.DNA_Methylation.EGAX00001364656_12