/EXTERNAL BLUEPRINT/methylation/K006421_12_lane_gembs

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SAMPLE K006421_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26826333 23219261 86.55 %
NonRefCpG 256066 186054 72.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006421_12_lane_gembs_coverage_refCpG.png ./IMG//K006421_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006421_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006421_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006421_12_lane_gembs_quality_refcpg.png ./IMG//K006421_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006421_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10550273 19.94 % 9063941 18.81 % 84942 17.37 % 57116 14.50 %
Intermediate (0.3-0.7) 11344914 21.45 % 9826152 20.40 % 116694 23.86 % 85412 21.68 %
Methylated (0.7-1) 31006432 58.61 % 29289054 60.79 % 287391 58.77 % 251362 63.82 %
Median Methylation 0.780 0.800 0.780 0.820