/EXTERNAL BLUEPRINT/K006423_1_lane_gembs

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SAMPLE K006423_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1252561022 100.00 % 626280511 100.00 % 626280511 100.00 %
General Reads 1220724789 97.46 % 612651054 97.82 % 608073735 97.09 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8615526 0.69 % 4319269 0.69 % 4296257 0.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23220707 1.85 % 9310188 1.49 % 13910519 2.22 %
Bisulfite_reads C2T 630147124 50.31 % 316243929 50.50 % 313903195 50.12 %
Bisulfite_reads G2A 599193191 47.84 % 300726394 48.02 % 298466797 47.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 520398856
Average Unique 83.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 49472459952 38.72 % 18938235987 29.65 % 30534223965 47.80 %
Base Counts Overall C 13719480510 10.74 % 542340255 0.85 % 13177140255 20.63 %
Base Counts Overall G 13842465145 10.83 % 13319337858 20.85 % 523127287 0.82 %
Base Counts Overall T 49444493926 38.70 % 30451599992 47.67 % 18992893934 29.73 %
Base Counts Overall N 1282324711 1.00 % 629098030 0.98 % 653226681 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991497803766711
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 598617431



Mapping Quality

Mapping Quality Histogram
K006423_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006423_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
6902MCL.Bisulfite-Seq.DNA_Methylation.EGAX00001364658_11