/EXTERNAL BLUEPRINT/mapping_coverage/K006423_1_lane_gembs
BACK
SAMPLE K006423_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1216382392 |
100% |
111521993828 |
100% |
| Mapped |
1205012255 |
99.07 % |
110373609991 |
98.97 % |
| Passed |
1031172292 |
84.77 % |
92815773728 |
83.23 % |
| NotPassed |
173839963 |
14.29 % |
17557836263 |
15.74 % |
| |
|
|
|
|
| LowMAPQ |
151879246 |
12.49 % |
15339803846 |
13.75 % |
| MateUnmapped |
11370137 |
0.93 % |
1148383837 |
1.03 % |
| Duplicate |
4343233 |
0.36 % |
438666533 |
0.39 % |
| BadOrientation |
12 |
0.00 % |
1212 |
0.00 % |
| LargeInsertSize |
4802 |
0.00 % |
485002 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17612670 |
1.45 % |
1778879670 |
1.60 % |
| Unmapped |
11370137 |
0.93 % |
1148383837 |
1.03 % |
Base Level Counts
| Bases |
# |
% |
| Total |
104140785385 |
100% |
| Passed |
87044964695 |
83.58 % |
| Trimmed |
4552478152 |
4.37 % |
| Clipped |
123057973 |
0.12 % |
| Overlapping |
11201953684 |
10.76 % |
| LowQuality |
1218330881 |
1.17 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |