/EXTERNAL BLUEPRINT/K006430_22_lane_gembs/BC2_10.Bisulfite-Seq.DNA_Methylation.EGAX00001400368

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SAMPLE K006430_22_lane_gembs LANE BC2_10.Bisulfite-Seq.DNA_Methylation.EGAX00001400368

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1006123262 100.00 % 503061631 100.00 % 503061631 100.00 %
General Reads 988488280 98.25 % 496576522 98.71 % 491911758 97.78 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1675873 0.17 % 841844 0.17 % 834029 0.17 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15959109 1.59 % 5643265 1.12 % 10315844 2.05 %
Bisulfite_reads C2T 510095272 50.70 % 256233092 50.93 % 253862180 50.46 %
Bisulfite_reads G2A 480068881 47.71 % 241185274 47.94 % 238883607 47.49 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 413297270
Average Unique 82.16 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38867294736 37.87 % 14778599133 28.80 % 24088695603 46.95 %
Base Counts Overall C 11886059266 11.58 % 530628221 1.03 % 11355431045 22.13 %
Base Counts Overall G 12027460804 11.72 % 11493276700 22.40 % 534184104 1.04 %
Base Counts Overall T 38813857063 37.82 % 24004733739 46.78 % 14809123324 28.86 %
Base Counts Overall N 1029900855 1.00 % 505048569 0.98 % 524852286 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9985430145175737
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 480312232



Mapping Quality

Mapping Quality Histogram
BC2_10.Bisulfite-Seq.DNA_Methylation.EGAX00001400368.mapq.png



Read Length

Read Length Reads
101 503061631
101 503061631



Insert Size Plot

Insert Size Histogram
BC2_10.Bisulfite-Seq.DNA_Methylation.EGAX00001400368.isize.png