/EXTERNAL BLUEPRINT/mapping_coverage/K006430_22_lane_gembs
BACK
SAMPLE K006430_22_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
987072025 |
100% |
86881823071 |
100% |
| Mapped |
976977096 |
98.98 % |
85862235242 |
98.83 % |
| Passed |
829490502 |
84.04 % |
70966089248 |
81.68 % |
| NotPassed |
147486594 |
14.94 % |
14896145994 |
17.15 % |
| |
|
|
|
|
| LowMAPQ |
131998928 |
13.37 % |
13331891728 |
15.34 % |
| MateUnmapped |
10094929 |
1.02 % |
1019587829 |
1.17 % |
| Duplicate |
1417879 |
0.14 % |
143205779 |
0.16 % |
| BadOrientation |
18 |
0.00 % |
1818 |
0.00 % |
| LargeInsertSize |
4872 |
0.00 % |
492072 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14064897 |
1.42 % |
1420554597 |
1.64 % |
| Unmapped |
10094929 |
1.02 % |
1019587829 |
1.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
83774049131 |
100% |
| Passed |
66567832205 |
79.46 % |
| Trimmed |
3560963969 |
4.25 % |
| Clipped |
93544043 |
0.11 % |
| Overlapping |
12714415840 |
15.18 % |
| LowQuality |
837293074 |
1.00 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |