/EXTERNAL BLUEPRINT/methylation/K006430_22_lane_gembs

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SAMPLE K006430_22_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26848517 23468566 87.41 %
NonRefCpG 269431 185102 68.70 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006430_22_lane_gembs_coverage_refCpG.png ./IMG//K006430_22_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006430_22_lane_gembs_coverage_nonRefCpG.png ./IMG//K006430_22_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006430_22_lane_gembs_quality_refcpg.png ./IMG//K006430_22_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006430_22_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6171340 11.69 % 5275146 10.92 % 55023 10.74 % 22648 5.67 %
Intermediate (0.3-0.7) 8006372 15.16 % 6651672 13.77 % 96584 18.86 % 62785 15.73 %
Methylated (0.7-1) 38629606 73.15 % 36394102 75.32 % 360550 70.40 % 313690 78.59 %
Median Methylation 0.850 0.860 0.830 0.860