/EXTERNAL BLUEPRINT/K006392_K006405_20_lane_gembs

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SAMPLE K006392_K006405_20_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2056892326 100.00 % 1028446163 100.00 % 1028446163 100.00 %
General Reads 1980619060 96.29 % 994426820 96.69 % 986192240 95.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24887734 1.21 % 12487918 1.21 % 12399816 1.21 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 51385532 2.50 % 21531425 2.09 % 29854107 2.90 %
Bisulfite_reads C2T 1039162393 50.52 % 521727520 50.73 % 517434873 50.31 %
Bisulfite_reads G2A 966344401 46.98 % 485187218 47.18 % 481157183 46.78 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 823973297
Average Unique 80.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 77282616234 36.84 % 30258178173 28.84 % 47024438061 44.83 %
Base Counts Overall C 26651658240 12.70 % 1382017828 1.32 % 25269640412 24.09 %
Base Counts Overall G 26955978813 12.85 % 25614832025 24.42 % 1341146788 1.28 %
Base Counts Overall T 76774241909 36.59 % 46594613786 44.42 % 30179628123 28.77 %
Base Counts Overall N 2138522056 1.02 % 1051866814 1.00 % 1086655242 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991963869316425
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 969245053



Mapping Quality

Mapping Quality Histogram
K006392_K006405_20_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006392_K006405_20_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345063_11
UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345077_9