/EXTERNAL BLUEPRINT/K006392_K006405_20_lane_gembs/UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345063_11

BACK

SAMPLE K006392_K006405_20_lane_gembs LANE UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345063_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1203130108 100.00 % 601565054 100.00 % 601565054 100.00 %
General Reads 1148073805 95.42 % 576147169 95.77 % 571926636 95.07 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 20092038 1.67 % 10079983 1.68 % 10012055 1.66 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 34964265 2.91 % 15337902 2.55 % 19626363 3.26 %
Bisulfite_reads C2T 611256833 50.81 % 306770466 51.00 % 304486367 50.62 %
Bisulfite_reads G2A 556909010 46.29 % 279456686 46.45 % 277452324 46.12 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 469467722
Average Unique 78.04 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43479367113 35.43 % 17264999467 28.14 % 26214367646 42.72 %
Base Counts Overall C 17284517947 14.08 % 977560167 1.59 % 16306957780 26.58 %
Base Counts Overall G 17508650595 14.27 % 16551376683 26.97 % 957273912 1.56 %
Base Counts Overall T 43192367351 35.20 % 25955458714 42.30 % 17236908637 28.09 %
Base Counts Overall N 1254368010 1.02 % 610240477 0.99 % 644127533 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992311389475433
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 563931836



Mapping Quality

Mapping Quality Histogram
UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345063_11.mapq.png



Read Length

Read Length Reads
101 601565054
101 601565054



Insert Size Plot

Insert Size Histogram
UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345063_11.isize.png