/EXTERNAL BLUEPRINT/K006392_K006405_20_lane_gembs/UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345077_9

BACK

SAMPLE K006392_K006405_20_lane_gembs LANE UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345077_9

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 853762218 100.00 % 426881109 100.00 % 426881109 100.00 %
General Reads 832545255 97.51 % 418279651 97.99 % 414265604 97.04 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4795696 0.56 % 2407935 0.56 % 2387761 0.56 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16421267 1.92 % 6193523 1.45 % 10227744 2.40 %
Bisulfite_reads C2T 427905560 50.12 % 214957054 50.36 % 212948506 49.88 %
Bisulfite_reads G2A 409435391 47.96 % 205730532 48.19 % 203704859 47.72 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 354505575
Average Unique 83.05 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33803249121 38.82 % 12993178706 29.84 % 20810070415 47.79 %
Base Counts Overall C 9367140293 10.76 % 404457661 0.93 % 8962682632 20.58 %
Base Counts Overall G 9447328218 10.85 % 9063455342 20.82 % 383872876 0.88 %
Base Counts Overall T 33581874558 38.56 % 20639155072 47.40 % 12942719486 29.72 %
Base Counts Overall N 884154046 1.02 % 441626337 1.01 % 442527709 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990395756261762
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 405313217



Mapping Quality

Mapping Quality Histogram
UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345077_9.mapq.png



Read Length

Read Length Reads
101 426881109
101 426881109



Insert Size Plot

Insert Size Histogram
UMCG00028.Bisulfite-Seq.DNA_Methylation.EGAX00001345077_9.isize.png