/EXTERNAL BLUEPRINT/mapping_coverage/K006392_K006405_20_lane_gembs
BACK
SAMPLE K006392_K006405_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1963630567 |
100% |
177445078886 |
100% |
| Mapped |
1943354682 |
98.97 % |
175397214501 |
98.85 % |
| Passed |
1604074283 |
81.69 % |
141129894202 |
79.53 % |
| NotPassed |
339280399 |
17.28 % |
34267320299 |
19.31 % |
| |
|
|
|
|
| LowMAPQ |
289452106 |
14.74 % |
29234662706 |
16.48 % |
| MateUnmapped |
20275885 |
1.03 % |
2047864385 |
1.15 % |
| Duplicate |
17020370 |
0.87 % |
1719057370 |
0.97 % |
| BadOrientation |
66 |
0.00 % |
6666 |
0.00 % |
| LargeInsertSize |
25418 |
0.00 % |
2567218 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
32782439 |
1.67 % |
3311026339 |
1.87 % |
| Unmapped |
20275885 |
1.03 % |
2047864385 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
162001193109 |
100% |
| Passed |
132618152309 |
81.86 % |
| Trimmed |
6979989717 |
4.31 % |
| Clipped |
176354348 |
0.11 % |
| Overlapping |
20694944559 |
12.77 % |
| LowQuality |
1531752176 |
0.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |