/EXTERNAL BLUEPRINT/methylation/K006392_K006405_20_lane_gembs
BACK
SAMPLE K006392_K006405_20_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26918191 |
24748598 |
91.94 % |
| NonRefCpG |
254388 |
193653 |
76.13 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
8297053 |
15.61 % |
7611307 |
15.12 % |
60607 |
12.51 % |
38829 |
9.65 % |
| Intermediate (0.3-0.7) |
7512306 |
14.13 % |
6720913 |
13.35 % |
84312 |
17.40 % |
60147 |
14.94 % |
| Methylated (0.7-1) |
37350610 |
70.26 % |
36005853 |
71.53 % |
339596 |
70.09 % |
303501 |
75.41 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.870 |
|
0.860 |
|
0.880 |
|