/EXTERNAL BLUEPRINT/K006366_20_lane_gembs

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SAMPLE K006366_20_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1335670080 100.00 % 667835040 100.00 % 667835040 100.00 %
General Reads 1274062995 95.39 % 640584175 95.92 % 633478820 94.86 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22439207 1.68 % 11264930 1.69 % 11174277 1.67 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 39167878 2.93 % 15985935 2.39 % 23181943 3.47 %
Bisulfite_reads C2T 681500201 51.02 % 342623777 51.30 % 338876424 50.74 %
Bisulfite_reads G2A 615002001 46.04 % 309225328 46.30 % 305776673 45.79 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 519649491
Average Unique 77.81 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 49106692876 36.04 % 19079105869 28.01 % 30027587007 44.08 %
Base Counts Overall C 18284134205 13.42 % 983234385 1.44 % 17300899820 25.40 %
Base Counts Overall G 18534907791 13.60 % 17560594956 25.78 % 974312835 1.43 %
Base Counts Overall T 48956807265 35.93 % 29823031827 43.78 % 19133775438 28.09 %
Base Counts Overall N 1355806023 1.00 % 673207043 0.99 % 682598980 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990172562998497
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 628065675



Mapping Quality

Mapping Quality Histogram
K006366_20_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006366_20_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
T12_20.Bisulfite-Seq.DNA_Methylation.EGAX00001312497