/EXTERNAL BLUEPRINT/mapping_coverage/K006366_20_lane_gembs
BACK
SAMPLE K006366_20_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1257115703 |
100% |
111407347219 |
100% |
| Mapped |
1241271158 |
98.74 % |
109807048174 |
98.56 % |
| Passed |
994005603 |
79.07 % |
84833227119 |
76.15 % |
| NotPassed |
247265555 |
19.67 % |
24973821055 |
22.42 % |
| |
|
|
|
|
| LowMAPQ |
211684906 |
16.84 % |
21380175506 |
19.19 % |
| MateUnmapped |
15844545 |
1.26 % |
1600299045 |
1.44 % |
| Duplicate |
16958699 |
1.35 % |
1712828599 |
1.54 % |
| BadOrientation |
26 |
0.00 % |
2626 |
0.00 % |
| LargeInsertSize |
14810 |
0.00 % |
1495810 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18607114 |
1.48 % |
1879318514 |
1.69 % |
| Unmapped |
15844545 |
1.26 % |
1600299045 |
1.44 % |
Base Level Counts
| Bases |
# |
% |
| Total |
100384756884 |
100% |
| Passed |
80044787138 |
79.74 % |
| Trimmed |
4233341622 |
4.22 % |
| Clipped |
113757800 |
0.11 % |
| Overlapping |
15437771965 |
15.38 % |
| LowQuality |
555098359 |
0.55 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |