/EXTERNAL BLUEPRINT/methylation/K006366_20_lane_gembs

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SAMPLE K006366_20_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26713243 20269307 75.88 %
NonRefCpG 382479 165961 43.39 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006366_20_lane_gembs_coverage_refCpG.png ./IMG//K006366_20_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006366_20_lane_gembs_coverage_nonRefCpG.png ./IMG//K006366_20_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006366_20_lane_gembs_quality_refcpg.png ./IMG//K006366_20_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006366_20_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7498542 15.09 % 5723404 13.68 % 164324 23.95 % 52024 12.63 %
Intermediate (0.3-0.7) 10862758 21.85 % 7725126 18.47 % 185206 26.99 % 95968 23.30 %
Methylated (0.7-1) 31346291 63.06 % 28377345 67.85 % 336579 49.06 % 263886 64.07 %
Median Methylation 0.800 0.820 0.690 0.800