/EXTERNAL BLUEPRINT/K006374_15_lane_gembs/WR27.Bisulfite-Seq.DNA_Methylation.EGAX00001343008_15

BACK

SAMPLE K006374_15_lane_gembs LANE WR27.Bisulfite-Seq.DNA_Methylation.EGAX00001343008_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1311797694 100.00 % 655898847 100.00 % 655898847 100.00 %
General Reads 1283194228 97.82 % 643839744 98.16 % 639354484 97.48 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5602729 0.43 % 2809818 0.43 % 2792911 0.43 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23000737 1.75 % 9249285 1.41 % 13751452 2.10 %
Bisulfite_reads C2T 660331313 50.34 % 331297699 50.51 % 329033614 50.17 %
Bisulfite_reads G2A 628465644 47.91 % 315351863 48.08 % 313113781 47.74 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 545792521
Average Unique 83.21 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 52013281556 38.87 % 19862253879 29.69 % 32151027677 48.06 %
Base Counts Overall C 14379019803 10.75 % 567088394 0.85 % 13811931409 20.65 %
Base Counts Overall G 14487473343 10.83 % 13937591355 20.83 % 549881988 0.82 %
Base Counts Overall T 51589839711 38.56 % 31868223894 47.63 % 19721615817 29.48 %
Base Counts Overall N 1333750375 1.00 % 666524872 1.00 % 667225503 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992870842464756
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 627157254



Mapping Quality

Mapping Quality Histogram
WR27.Bisulfite-Seq.DNA_Methylation.EGAX00001343008_15.mapq.png



Read Length

Read Length Reads
101 655898847
101 655898847



Insert Size Plot

Insert Size Histogram
WR27.Bisulfite-Seq.DNA_Methylation.EGAX00001343008_15.isize.png