/EXTERNAL BLUEPRINT/mapping_coverage/K006374_15_lane_gembs
BACK
SAMPLE K006374_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1280164076 |
100% |
116795715696 |
100% |
| Mapped |
1268713403 |
99.11 % |
115639197723 |
99.01 % |
| Passed |
1088013096 |
84.99 % |
97388466716 |
83.38 % |
| NotPassed |
180700307 |
14.12 % |
18250731007 |
15.63 % |
| |
|
|
|
|
| LowMAPQ |
159102044 |
12.43 % |
16069306444 |
13.76 % |
| MateUnmapped |
11450673 |
0.89 % |
1156517973 |
0.99 % |
| Duplicate |
3031730 |
0.24 % |
306204730 |
0.26 % |
| BadOrientation |
28 |
0.00 % |
2828 |
0.00 % |
| LargeInsertSize |
5528 |
0.00 % |
558328 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18560977 |
1.45 % |
1874658677 |
1.61 % |
| Unmapped |
11450673 |
0.89 % |
1156517973 |
0.99 % |
Base Level Counts
| Bases |
# |
% |
| Total |
109882135132 |
100% |
| Passed |
91457587689 |
83.23 % |
| Trimmed |
4772745422 |
4.34 % |
| Clipped |
128310895 |
0.12 % |
| Overlapping |
12365357521 |
11.25 % |
| LowQuality |
1158133605 |
1.05 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |