/EXTERNAL BLUEPRINT/methylation/K006374_15_lane_gembs

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SAMPLE K006374_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26891148 23538796 87.53 %
NonRefCpG 272653 198002 72.62 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006374_15_lane_gembs_coverage_refCpG.png ./IMG//K006374_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006374_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006374_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006374_15_lane_gembs_quality_refcpg.png ./IMG//K006374_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006374_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11566414 21.81 % 10066874 20.72 % 103187 19.76 % 71622 17.01 %
Intermediate (0.3-0.7) 10306892 19.43 % 8971301 18.46 % 114723 21.96 % 83447 19.82 %
Methylated (0.7-1) 31167973 58.76 % 29550524 60.82 % 304418 58.28 % 265981 63.17 %
Median Methylation 0.790 0.800 0.780 0.820