/EXTERNAL BLUEPRINT/K010534_K010535_2_lane_gembs

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SAMPLE K010534_K010535_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 238924940 100.00 % 119462470 100.00 % 119462470 100.00 %
General Reads 233770915 97.84 % 117362191 98.24 % 116408724 97.44 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 813130 0.34 % 407994 0.34 % 405136 0.34 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4340895 1.82 % 1692285 1.42 % 2648610 2.22 %
Bisulfite_reads C2T 120933917 50.62 % 60709384 50.82 % 60224533 50.41 %
Bisulfite_reads G2A 113650128 47.57 % 57060801 47.76 % 56589327 47.37 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 97980600
Average Unique 82.02 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 9172245597 37.64 % 3477799535 28.54 % 5694446062 46.73 %
Base Counts Overall C 2889211329 11.86 % 139585208 1.15 % 2749626121 22.57 %
Base Counts Overall G 2911620059 11.95 % 2774611798 22.77 % 137008261 1.12 %
Base Counts Overall T 9153049342 37.56 % 5671035684 46.54 % 3482013658 28.58 %
Base Counts Overall N 244217553 1.00 % 122139715 1.00 % 122077838 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987109229496431
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 114167273



Mapping Quality

Mapping Quality Histogram
K010534_K010535_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010534_K010535_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010534_1798776_2
EXTERNAL-K010535_1798777_2