/EXTERNAL BLUEPRINT/mapping_coverage/K010534_K010535_2_lane_gembs
BACK
SAMPLE K010534_K010535_2_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
233620753 |
100% |
21244170756 |
100% |
| Mapped |
231388805 |
99.04 % |
21018744008 |
98.94 % |
| Passed |
196506413 |
84.11 % |
17495622416 |
82.35 % |
| NotPassed |
34882392 |
14.93 % |
3523121592 |
16.58 % |
| |
|
|
|
|
| LowMAPQ |
31593120 |
13.52 % |
3190905120 |
15.02 % |
| MateUnmapped |
2231948 |
0.96 % |
225426748 |
1.06 % |
| Duplicate |
150075 |
0.06 % |
15157575 |
0.07 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
1812 |
0.00 % |
183012 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3137375 |
1.34 % |
316874875 |
1.49 % |
| Unmapped |
2231948 |
0.96 % |
225426748 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
19832439588 |
100% |
| Passed |
16426970442 |
82.83 % |
| Trimmed |
859424289 |
4.33 % |
| Clipped |
21653378 |
0.11 % |
| Overlapping |
2315163794 |
11.67 % |
| LowQuality |
209227685 |
1.05 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |