/EXTERNAL BLUEPRINT/methylation/K010534_K010535_2_lane_gembs
BACK
SAMPLE K010534_K010535_2_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26078739 |
5100029 |
19.56 % |
| NonRefCpG |
390025 |
30063 |
7.71 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6442118 |
13.55 % |
655822 |
5.03 % |
187840 |
26.90 % |
6900 |
6.89 % |
| Intermediate (0.3-0.7) |
13316000 |
28.01 % |
2429257 |
18.62 % |
215264 |
30.83 % |
20377 |
20.35 % |
| Methylated (0.7-1) |
27786331 |
58.44 % |
9959883 |
76.35 % |
295233 |
42.28 % |
72877 |
72.76 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.760 |
|
0.860 |
|
0.610 |
|
0.840 |
|