/EXTERNAL BLUEPRINT/K006386_K006399_19_lane_gembs/UMCG00011.Bisulfite-Seq.DNA_Methylation.EGAX00001345057_11

BACK

SAMPLE K006386_K006399_19_lane_gembs LANE UMCG00011.Bisulfite-Seq.DNA_Methylation.EGAX00001345057_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1158727448 100.00 % 579363724 100.00 % 579363724 100.00 %
General Reads 1088583498 93.95 % 545754747 94.20 % 542828751 93.69 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 29972309 2.59 % 15014998 2.59 % 14957311 2.58 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 40171641 3.47 % 18593979 3.21 % 21577662 3.72 %
Bisulfite_reads C2T 597286801 51.55 % 299529720 51.70 % 297757081 51.39 %
Bisulfite_reads G2A 521269006 44.99 % 261240025 45.09 % 260028981 44.88 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 422392726
Average Unique 72.91 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40735560729 34.47 % 16960552777 28.70 % 23775007952 40.23 %
Base Counts Overall C 17835442466 15.09 % 1125516231 1.90 % 16709926235 28.28 %
Base Counts Overall G 17951970193 15.19 % 16843410990 28.50 % 1108559203 1.88 %
Base Counts Overall T 40464294195 34.24 % 23577192778 39.90 % 16887101417 28.58 %
Base Counts Overall N 1202932113 1.02 % 588427072 1.00 % 614505041 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989897431146598
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 534915685



Mapping Quality

Mapping Quality Histogram
UMCG00011.Bisulfite-Seq.DNA_Methylation.EGAX00001345057_11.mapq.png



Read Length

Read Length Reads
101 579363724
101 579363724



Insert Size Plot

Insert Size Histogram
UMCG00011.Bisulfite-Seq.DNA_Methylation.EGAX00001345057_11.isize.png