/EXTERNAL BLUEPRINT/K006386_K006399_19_lane_gembs/UMCG00011.Bisulfite-Seq.DNA_Methylation.EGAX00001345071_8

BACK

SAMPLE K006386_K006399_19_lane_gembs LANE UMCG00011.Bisulfite-Seq.DNA_Methylation.EGAX00001345071_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 825413790 100.00 % 412706895 100.00 % 412706895 100.00 %
General Reads 805124642 97.54 % 404063423 97.91 % 401061219 97.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4828846 0.59 % 2421265 0.59 % 2407581 0.58 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 15460302 1.87 % 6222207 1.51 % 9238095 2.24 %
Bisulfite_reads C2T 414988657 50.28 % 208254139 50.46 % 206734518 50.09 %
Bisulfite_reads G2A 394964831 47.85 % 198230549 48.03 % 196734282 47.67 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 342494932
Average Unique 82.99 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 32554116564 38.67 % 12461907254 29.60 % 20092209310 47.73 %
Base Counts Overall C 9191836187 10.92 % 422027609 1.00 % 8769808578 20.83 %
Base Counts Overall G 9255897974 10.99 % 8854422139 21.03 % 401475835 0.95 %
Base Counts Overall T 32339857008 38.41 % 19937026856 47.36 % 12402830152 29.46 %
Base Counts Overall N 850498847 1.01 % 420719432 1.00 % 429779415 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991232294632957
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 393774561



Mapping Quality

Mapping Quality Histogram
UMCG00011.Bisulfite-Seq.DNA_Methylation.EGAX00001345071_8.mapq.png



Read Length

Read Length Reads
101 412706895
101 412706895



Insert Size Plot

Insert Size Histogram
UMCG00011.Bisulfite-Seq.DNA_Methylation.EGAX00001345071_8.isize.png