/EXTERNAL BLUEPRINT/mapping_coverage/K006386_K006399_19_lane_gembs
BACK
SAMPLE K006386_K006399_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1873334482 |
100% |
167555755286 |
100% |
| Mapped |
1854942584 |
99.02 % |
165698173588 |
98.89 % |
| Passed |
1469058327 |
78.42 % |
126723863631 |
75.63 % |
| NotPassed |
385884257 |
20.60 % |
38974309957 |
23.26 % |
| |
|
|
|
|
| LowMAPQ |
331510098 |
17.70 % |
33482519898 |
19.98 % |
| MateUnmapped |
18391898 |
0.98 % |
1857581698 |
1.11 % |
| Duplicate |
20429627 |
1.09 % |
2063392327 |
1.23 % |
| BadOrientation |
112 |
0.00 % |
11312 |
0.00 % |
| LargeInsertSize |
44406 |
0.00 % |
4485006 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
33900014 |
1.81 % |
3423901414 |
2.04 % |
| Unmapped |
18391898 |
0.98 % |
1857581698 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
148364960707 |
100% |
| Passed |
119146441726 |
80.31 % |
| Trimmed |
6331493389 |
4.27 % |
| Clipped |
153702993 |
0.10 % |
| Overlapping |
21487394083 |
14.48 % |
| LowQuality |
1245928516 |
0.84 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |