/EXTERNAL BLUEPRINT/methylation/K006386_K006399_19_lane_gembs
BACK
SAMPLE K006386_K006399_19_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26987985 |
24271513 |
89.93 % |
| NonRefCpG |
258310 |
191314 |
74.06 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6927221 |
13.01 % |
6142987 |
12.35 % |
51262 |
10.41 % |
28620 |
7.11 % |
| Intermediate (0.3-0.7) |
6636480 |
12.47 % |
5727388 |
11.51 % |
77589 |
15.76 % |
51996 |
12.93 % |
| Methylated (0.7-1) |
39674303 |
74.52 % |
37882784 |
76.14 % |
363409 |
73.82 % |
321647 |
79.96 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.880 |
|
0.890 |
|
0.870 |
|
0.890 |
|