{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 35068572, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 32036692, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 91.35, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 40435504, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 39834022, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.51, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 28155948, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 15101508, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.536352
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 31909567, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 811855, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.025442
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 28151706, 
            "distinct_read_pairs": 13544184, 
            "one_read_pair": 6551938, 
            "two_read_pair": 3128342, 
            "NRF": 0.481114, 
            "PBC1": 0.483745, 
            "PBC2": 2.09438
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 31854278, 
            "distinct_read_pairs": 31099457, 
            "one_read_pair": 30394886, 
            "two_read_pair": 688185, 
            "NRF": 0.976304, 
            "PBC1": 0.977345, 
            "PBC2": 44.166737
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 13054440, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 13054440, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 31097712, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 31097712, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 26063, 
        "Np": 0, 
        "N_opt": 26063, 
        "N_consv": 26063, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 185, 
            "corr_est_frag_len": 0.341257411693431, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2796979, 
            "argmin_corr": 1500, 
            "min_corr": 0.133355, 
            "NSC": 2.559015, 
            "RSC": 1.420653
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.600423548902
        }, 
        "rep1-pr1": {
            "FRiP": 0.59096701752
        }, 
        "rep1-pr2": {
            "FRiP": 0.591508060561
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.586312300585
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.0746538219083, 
            "auc": 0.484962214694, 
            "ch_div": 0.492710536733, 
            "elbow_pt": 4.8302181639e-37, 
            "jsd": 0.885473855098, 
            "syn_auc": 0.523609991507, 
            "syn_elbow_pt": 0.526108415181, 
            "syn_jsd": 0.582249952299
        }
    ]
}
