/EXTERNAL BLUEPRINT/K006375_15_lane_gembs/TA37.Bisulfite-Seq.DNA_Methylation.EGAX00001343009_15

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SAMPLE K006375_15_lane_gembs LANE TA37.Bisulfite-Seq.DNA_Methylation.EGAX00001343009_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1400997388 100.00 % 700498694 100.00 % 700498694 100.00 %
General Reads 1367555276 97.61 % 686405174 97.99 % 681150102 97.24 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5839022 0.42 % 2928434 0.42 % 2910588 0.42 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27603090 1.97 % 11165086 1.59 % 16438004 2.35 %
Bisulfite_reads C2T 702615923 50.15 % 352630554 50.34 % 349985369 49.96 %
Bisulfite_reads G2A 670778375 47.88 % 336703054 48.07 % 334075321 47.69 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 584385905
Average Unique 83.42 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 55369128254 38.75 % 21228458932 29.71 % 34140669322 47.78 %
Base Counts Overall C 15370388495 10.76 % 681802710 0.95 % 14688585785 20.56 %
Base Counts Overall G 15502685989 10.85 % 14847095597 20.78 % 655590392 0.92 %
Base Counts Overall T 55234064975 38.65 % 33989325090 47.57 % 21244739885 29.73 %
Base Counts Overall N 1425465863 1.00 % 704184459 0.99 % 721281404 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9993032288087662
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 668502067



Mapping Quality

Mapping Quality Histogram
TA37.Bisulfite-Seq.DNA_Methylation.EGAX00001343009_15.mapq.png



Read Length

Read Length Reads
101 700498694
101 700498694



Insert Size Plot

Insert Size Histogram
TA37.Bisulfite-Seq.DNA_Methylation.EGAX00001343009_15.isize.png