/EXTERNAL BLUEPRINT/mapping_coverage/K006375_15_lane_gembs
BACK
SAMPLE K006375_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1364432445 |
100% |
124279296854 |
100% |
| Mapped |
1351628101 |
99.06 % |
122986058110 |
98.96 % |
| Passed |
1165397644 |
85.41 % |
104176781953 |
83.82 % |
| NotPassed |
186230457 |
13.65 % |
18809276157 |
15.13 % |
| |
|
|
|
|
| LowMAPQ |
163897970 |
12.01 % |
16553694970 |
13.32 % |
| MateUnmapped |
12804344 |
0.94 % |
1293238744 |
1.04 % |
| Duplicate |
3124149 |
0.23 % |
315539049 |
0.25 % |
| BadOrientation |
14 |
0.00 % |
1414 |
0.00 % |
| LargeInsertSize |
5316 |
0.00 % |
536916 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19203008 |
1.41 % |
1939503808 |
1.56 % |
| Unmapped |
12804344 |
0.94 % |
1293238744 |
1.04 % |
Base Level Counts
| Bases |
# |
% |
| Total |
117698127192 |
100% |
| Passed |
97695139139 |
83.00 % |
| Trimmed |
5110473339 |
4.34 % |
| Clipped |
146540980 |
0.12 % |
| Overlapping |
13374804259 |
11.36 % |
| LowQuality |
1371169475 |
1.16 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |