/EXTERNAL BLUEPRINT/methylation/K006375_15_lane_gembs

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SAMPLE K006375_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26802759 24255345 90.50 %
NonRefCpG 256956 194712 75.78 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006375_15_lane_gembs_coverage_refCpG.png ./IMG//K006375_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006375_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006375_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006375_15_lane_gembs_quality_refcpg.png ./IMG//K006375_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006375_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8402862 15.88 % 7487764 15.13 % 64846 13.24 % 43235 10.68 %
Intermediate (0.3-0.7) 8740122 16.52 % 7762206 15.68 % 94185 19.24 % 68212 16.86 %
Methylated (0.7-1) 35772894 67.60 % 34255112 69.20 % 330620 67.52 % 293239 72.46 %
Median Methylation 0.850 0.860 0.840 0.870