{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 59772105, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 55391923, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 92.67, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 44724457, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 43936392, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.24, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 45879836, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 6329355, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.137955
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 35052290, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 883451, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.025204
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 45876912, 
            "distinct_read_pairs": 39818752, 
            "one_read_pair": 34521388, 
            "two_read_pair": 4633833, 
            "NRF": 0.867948, 
            "PBC1": 0.866963, 
            "PBC2": 7.449856
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 35015242, 
            "distinct_read_pairs": 34168360, 
            "one_read_pair": 33391562, 
            "two_read_pair": 757498, 
            "NRF": 0.975814, 
            "PBC1": 0.977266, 
            "PBC2": 44.081386
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 39550481, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 39550481, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 34168839, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 34168839, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 106411, 
        "Np": 0, 
        "N_opt": 106411, 
        "N_consv": 106411, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 220, 
            "corr_est_frag_len": 0.191015112300382, 
            "phantom_peak": 45, 
            "corr_phantom_peak": 0.1846647, 
            "argmin_corr": 1500, 
            "min_corr": 0.1702974, 
            "NSC": 1.121656, 
            "RSC": 1.441999
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.292109923967
        }, 
        "rep1-pr1": {
            "FRiP": 0.297960692762
        }, 
        "rep1-pr2": {
            "FRiP": 0.297864607323
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.25957794825
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.204998914961, 
            "auc": 0.491365479056, 
            "ch_div": 0.150831209077, 
            "elbow_pt": 2.75530228707e-114, 
            "jsd": 0.714381966312, 
            "syn_auc": 0.514500966531, 
            "syn_elbow_pt": 0.252981670956, 
            "syn_jsd": 0.382846531937
        }
    ]
}
