/EXTERNAL BLUEPRINT/K006387_K006400_25_lane_gembs/UMCG00009.Bisulfite-Seq.DNA_Methylation.EGAX00001345058_14

BACK

SAMPLE K006387_K006400_25_lane_gembs LANE UMCG00009.Bisulfite-Seq.DNA_Methylation.EGAX00001345058_14

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1153906114 100.00 % 576953057 100.00 % 576953057 100.00 %
General Reads 1079633241 93.56 % 541341126 93.83 % 538292115 93.30 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 42105379 3.65 % 21088897 3.66 % 21016482 3.64 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32167494 2.79 % 14523034 2.52 % 17644460 3.06 %
Bisulfite_reads C2T 594881110 51.55 % 298307156 51.70 % 296573954 51.40 %
Bisulfite_reads G2A 526857510 45.66 % 264122867 45.78 % 262734643 45.54 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 438641344
Average Unique 76.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40938697988 34.78 % 16632047196 28.26 % 24306650792 41.30 %
Base Counts Overall C 17063232586 14.50 % 1017609449 1.73 % 16045623137 27.27 %
Base Counts Overall G 17365136144 14.75 % 16367532750 27.81 % 997603394 1.70 %
Base Counts Overall T 40794553417 34.66 % 24250540487 41.21 % 16544012930 28.11 %
Base Counts Overall N 1536803493 1.31 % 581481932 0.99 % 955321561 1.62 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988326262420227
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 539709127



Mapping Quality

Mapping Quality Histogram
UMCG00009.Bisulfite-Seq.DNA_Methylation.EGAX00001345058_14.mapq.png



Read Length

Read Length Reads
101 576953057
101 576953057



Insert Size Plot

Insert Size Histogram
UMCG00009.Bisulfite-Seq.DNA_Methylation.EGAX00001345058_14.isize.png