/EXTERNAL BLUEPRINT/K006387_K006400_25_lane_gembs/UMCG00009.Bisulfite-Seq.DNA_Methylation.EGAX00001345072_11

BACK

SAMPLE K006387_K006400_25_lane_gembs LANE UMCG00009.Bisulfite-Seq.DNA_Methylation.EGAX00001345072_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 881399988 100.00 % 440699994 100.00 % 440699994 100.00 %
General Reads 855282052 97.04 % 429074864 97.36 % 426207188 96.71 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8447992 0.96 % 4233118 0.96 % 4214874 0.96 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17669944 2.00 % 7392012 1.68 % 10277932 2.33 %
Bisulfite_reads C2T 441968328 50.14 % 221703289 50.31 % 220265039 49.98 %
Bisulfite_reads G2A 421761716 47.85 % 211604693 48.02 % 210157023 47.69 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 367174411
Average Unique 83.32 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 34746260535 38.65 % 13298228452 29.58 % 21448032083 47.71 %
Base Counts Overall C 9751770094 10.85 % 470041147 1.05 % 9281728947 20.65 %
Base Counts Overall G 9849068655 10.96 % 9399087134 20.91 % 449981521 1.00 %
Base Counts Overall T 34656674493 38.55 % 21337296198 47.47 % 13319378295 29.63 %
Base Counts Overall N 899024999 1.00 % 446746457 0.99 % 452278542 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.998907166578197
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 420660324



Mapping Quality

Mapping Quality Histogram
UMCG00009.Bisulfite-Seq.DNA_Methylation.EGAX00001345072_11.mapq.png



Read Length

Read Length Reads
101 440699994
101 440699994



Insert Size Plot

Insert Size Histogram
UMCG00009.Bisulfite-Seq.DNA_Methylation.EGAX00001345072_11.isize.png