/EXTERNAL BLUEPRINT/mapping_coverage/K006387_K006400_25_lane_gembs
BACK
SAMPLE K006387_K006400_25_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1911328562 |
100% |
172174363345 |
100% |
| Mapped |
1893771049 |
99.08 % |
170401054532 |
98.97 % |
| Passed |
1529083315 |
80.00 % |
133567593398 |
77.58 % |
| NotPassed |
364687734 |
19.08 % |
36833461134 |
21.39 % |
| |
|
|
|
|
| LowMAPQ |
309439710 |
16.19 % |
31253410710 |
18.15 % |
| MateUnmapped |
17557513 |
0.92 % |
1773308813 |
1.03 % |
| Duplicate |
23632398 |
1.24 % |
2386872198 |
1.39 % |
| BadOrientation |
86 |
0.00 % |
8686 |
0.00 % |
| LargeInsertSize |
36314 |
0.00 % |
3667714 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31579226 |
1.65 % |
3189501826 |
1.85 % |
| Unmapped |
17557513 |
0.92 % |
1773308813 |
1.03 % |
Base Level Counts
| Bases |
# |
% |
| Total |
154427327238 |
100% |
| Passed |
125581783251 |
81.32 % |
| Trimmed |
6647113058 |
4.30 % |
| Clipped |
408060760 |
0.26 % |
| Overlapping |
20451673080 |
13.24 % |
| LowQuality |
1338697089 |
0.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |