/EXTERNAL BLUEPRINT/methylation/K006387_K006400_25_lane_gembs
BACK
SAMPLE K006387_K006400_25_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26900181 |
24782874 |
92.13 % |
| NonRefCpG |
255937 |
195039 |
76.21 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6855244 |
12.91 % |
6282464 |
12.48 % |
45529 |
9.36 % |
26452 |
6.55 % |
| Intermediate (0.3-0.7) |
6386475 |
12.02 % |
5662836 |
11.25 % |
72576 |
14.92 % |
49183 |
12.17 % |
| Methylated (0.7-1) |
39874257 |
75.07 % |
38398201 |
76.27 % |
368223 |
75.71 % |
328486 |
81.28 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.880 |
|
0.890 |
|
0.880 |
|
0.890 |
|