/EXTERNAL BLUEPRINT/K006422_14_lane_gembs

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SAMPLE K006422_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1200143648 100.00 % 600071824 100.00 % 600071824 100.00 %
General Reads 1166805109 97.22 % 585831082 97.63 % 580974027 96.82 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5714011 0.48 % 2865756 0.48 % 2848255 0.47 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27624528 2.30 % 11374986 1.90 % 16249542 2.71 %
Bisulfite_reads C2T 601768613 50.14 % 302117982 50.35 % 299650631 49.94 %
Bisulfite_reads G2A 570750507 47.56 % 286578856 47.76 % 284171651 47.36 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 488757310
Average Unique 81.45 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 47236843165 38.59 % 18091426165 29.56 % 29145417000 47.62 %
Base Counts Overall C 13395712950 10.94 % 588054404 0.96 % 12807658546 20.93 %
Base Counts Overall G 13498354584 11.03 % 12937540433 21.14 % 560814151 0.92 %
Base Counts Overall T 47064142494 38.45 % 28986579128 47.36 % 18077563366 29.53 %
Base Counts Overall N 1219598903 1.00 % 603725918 0.99 % 615872985 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.999174048619588
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 565243334



Mapping Quality

Mapping Quality Histogram
K006422_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006422_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
817-03MCL.Bisulfite-Seq.DNA_Methylation.EGAX00001364657_14