/EXTERNAL BLUEPRINT/mapping_coverage/K006422_14_lane_gembs
BACK
SAMPLE K006422_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1162505440 |
100% |
104890224728 |
100% |
| Mapped |
1150601450 |
98.98 % |
103687921738 |
98.85 % |
| Passed |
971224266 |
83.55 % |
85570826154 |
81.58 % |
| NotPassed |
179377184 |
15.43 % |
18117095584 |
17.27 % |
| |
|
|
|
|
| LowMAPQ |
149411830 |
12.85 % |
15090594830 |
14.39 % |
| MateUnmapped |
11903990 |
1.02 % |
1202302990 |
1.15 % |
| Duplicate |
4301967 |
0.37 % |
434498667 |
0.41 % |
| BadOrientation |
20 |
0.00 % |
2020 |
0.00 % |
| LargeInsertSize |
7444 |
0.00 % |
751844 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25655923 |
2.21 % |
2591248223 |
2.47 % |
| Unmapped |
11903990 |
1.02 % |
1202302990 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
98087962647 |
100% |
| Passed |
80300821184 |
81.87 % |
| Trimmed |
4214246321 |
4.30 % |
| Clipped |
124331464 |
0.13 % |
| Overlapping |
12392805029 |
12.63 % |
| LowQuality |
1055758649 |
1.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |