/EXTERNAL BLUEPRINT/methylation/K006422_14_lane_gembs

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SAMPLE K006422_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26822458 23430774 87.36 %
NonRefCpG 264482 191802 72.52 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006422_14_lane_gembs_coverage_refCpG.png ./IMG//K006422_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006422_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006422_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006422_14_lane_gembs_quality_refcpg.png ./IMG//K006422_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006422_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11208235 21.19 % 9883792 20.38 % 101147 20.04 % 71197 17.52 %
Intermediate (0.3-0.7) 11156394 21.09 % 9748847 20.11 % 121204 24.01 % 89532 22.03 %
Methylated (0.7-1) 30540034 57.73 % 28855326 59.51 % 282428 55.95 % 245688 60.45 %
Median Methylation 0.780 0.790 0.760 0.800