/EXTERNAL BLUEPRINT/K006414_11_lane_gembs

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SAMPLE K006414_11_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1259271444 100.00 % 629635722 100.00 % 629635722 100.00 %
General Reads 1229378761 97.63 % 617153604 98.02 % 612225157 97.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 4985507 0.40 % 2501386 0.40 % 2484121 0.39 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24907176 1.98 % 9980732 1.59 % 14926444 2.37 %
Bisulfite_reads C2T 633347402 50.29 % 317922896 50.49 % 315424506 50.10 %
Bisulfite_reads G2A 601016866 47.73 % 301732094 47.92 % 299284772 47.53 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 516759019
Average Unique 82.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 49803105785 38.77 % 19028990965 29.63 % 30774114820 47.92 %
Base Counts Overall C 13727691099 10.69 % 635206881 0.99 % 13092484218 20.39 %
Base Counts Overall G 13853921009 10.79 % 13251270174 20.63 % 602650835 0.94 %
Base Counts Overall T 49772845722 38.75 % 30675026741 47.76 % 19097818981 29.74 %
Base Counts Overall N 1288123673 1.00 % 632348883 0.98 % 655774790 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991133303324359
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 597316950



Mapping Quality

Mapping Quality Histogram
K006414_11_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006414_11_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
B270.Bisulfite-Seq.DNA_Methylation.EGAX00001364649_11