/EXTERNAL BLUEPRINT/mapping_coverage/K006414_11_lane_gembs
BACK
SAMPLE K006414_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1225190993 |
100% |
111627255823 |
100% |
| Mapped |
1213258175 |
99.03 % |
110422041205 |
98.92 % |
| Passed |
1028351226 |
83.93 % |
91746439356 |
82.19 % |
| NotPassed |
184906949 |
15.09 % |
18675601849 |
16.73 % |
| |
|
|
|
|
| LowMAPQ |
157068176 |
12.82 % |
15863885776 |
14.21 % |
| MateUnmapped |
11932818 |
0.97 % |
1205214618 |
1.08 % |
| Duplicate |
4189818 |
0.34 % |
423171618 |
0.38 % |
| BadOrientation |
24 |
0.00 % |
2424 |
0.00 % |
| LargeInsertSize |
6292 |
0.00 % |
635492 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23642639 |
1.93 % |
2387906539 |
2.14 % |
| Unmapped |
11932818 |
0.97 % |
1205214618 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
103856518764 |
100% |
| Passed |
86033109679 |
82.84 % |
| Trimmed |
4511699090 |
4.34 % |
| Clipped |
128986215 |
0.12 % |
| Overlapping |
11981093193 |
11.54 % |
| LowQuality |
1201630587 |
1.16 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |