/EXTERNAL BLUEPRINT/methylation/K006414_11_lane_gembs

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SAMPLE K006414_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26798642 23714532 88.49 %
NonRefCpG 256646 192847 75.14 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006414_11_lane_gembs_coverage_refCpG.png ./IMG//K006414_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006414_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006414_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006414_11_lane_gembs_quality_refcpg.png ./IMG//K006414_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006414_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6159293 11.65 % 5102509 10.46 % 38197 7.82 % 18248 4.56 %
Intermediate (0.3-0.7) 7073636 13.38 % 6005715 12.31 % 77649 15.90 % 51598 12.88 %
Methylated (0.7-1) 39644042 74.97 % 37676399 77.23 % 372606 76.28 % 330733 82.56 %
Median Methylation 0.860 0.870 0.860 0.880