/EXTERNAL BLUEPRINT/K006379_15_lane_gembs/23977.Bisulfite-Seq.DNA_Methylation.EGAX00001343013_15

BACK

SAMPLE K006379_15_lane_gembs LANE 23977.Bisulfite-Seq.DNA_Methylation.EGAX00001343013_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1456846336 100.00 % 728423168 100.00 % 728423168 100.00 %
General Reads 1424383356 97.77 % 715030525 98.16 % 709352831 97.38 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5374776 0.37 % 2697514 0.37 % 2677262 0.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27088204 1.86 % 10695129 1.47 % 16393075 2.25 %
Bisulfite_reads C2T 731355212 50.20 % 367102491 50.40 % 364252721 50.01 %
Bisulfite_reads G2A 698402920 47.94 % 350625548 48.13 % 347777372 47.74 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 603370892
Average Unique 82.83 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 57844522522 38.93 % 22067826417 29.70 % 35776696105 48.15 %
Base Counts Overall C 15876058155 10.68 % 493490350 0.66 % 15382567805 20.70 %
Base Counts Overall G 16025574663 10.78 % 15552664820 20.93 % 472909843 0.64 %
Base Counts Overall T 57370985055 38.61 % 35444992029 47.71 % 21925993026 29.51 %
Base Counts Overall N 1481185877 1.00 % 740189520 1.00 % 740996357 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991110805833292
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 695383593



Mapping Quality

Mapping Quality Histogram
23977.Bisulfite-Seq.DNA_Methylation.EGAX00001343013_15.mapq.png



Read Length

Read Length Reads
101 728423168
101 728423168



Insert Size Plot

Insert Size Histogram
23977.Bisulfite-Seq.DNA_Methylation.EGAX00001343013_15.isize.png