/EXTERNAL BLUEPRINT/mapping_coverage/K006379_15_lane_gembs
BACK
SAMPLE K006379_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1419891469 |
100% |
130787014704 |
100% |
| Mapped |
1406513620 |
99.06 % |
129435851955 |
98.97 % |
| Passed |
1201259332 |
84.60 % |
108705168867 |
83.12 % |
| NotPassed |
205254288 |
14.46 % |
20730683088 |
15.85 % |
| |
|
|
|
|
| LowMAPQ |
179165360 |
12.62 % |
18095701360 |
13.84 % |
| MateUnmapped |
13377849 |
0.94 % |
1351162749 |
1.03 % |
| Duplicate |
4492819 |
0.32 % |
453774719 |
0.35 % |
| BadOrientation |
12 |
0.00 % |
1212 |
0.00 % |
| LargeInsertSize |
7566 |
0.00 % |
764166 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21588531 |
1.52 % |
2180441631 |
1.67 % |
| Unmapped |
13377849 |
0.94 % |
1351162749 |
1.03 % |
Base Level Counts
| Bases |
# |
% |
| Total |
121318282817 |
100% |
| Passed |
102088463114 |
84.15 % |
| Trimmed |
5311957383 |
4.38 % |
| Clipped |
139765251 |
0.12 % |
| Overlapping |
12473348699 |
10.28 % |
| LowQuality |
1304748370 |
1.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |