/EXTERNAL BLUEPRINT/methylation/K006379_15_lane_gembs

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SAMPLE K006379_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26824415 23734650 88.48 %
NonRefCpG 267867 197446 73.71 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006379_15_lane_gembs_coverage_refCpG.png ./IMG//K006379_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006379_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006379_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006379_15_lane_gembs_quality_refcpg.png ./IMG//K006379_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006379_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 20852748 39.37 % 19152715 39.06 % 200825 38.94 % 161378 38.27 %
Intermediate (0.3-0.7) 12217886 23.07 % 10975800 22.38 % 129840 25.18 % 99744 23.65 %
Methylated (0.7-1) 19895425 37.56 % 18909450 38.56 % 185040 35.88 % 160599 38.08 %
Median Methylation 0.480 0.490 0.470 0.500