/EXTERNAL BLUEPRINT/K006411_12_lane_gembs/S01GU9.Bisulfite-Seq.DNA_Methylation.EGAX00001345146_12

BACK

SAMPLE K006411_12_lane_gembs LANE S01GU9.Bisulfite-Seq.DNA_Methylation.EGAX00001345146_12

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1216857644 100.00 % 608428822 100.00 % 608428822 100.00 %
General Reads 1186917576 97.54 % 596139792 97.98 % 590777784 97.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 6727818 0.55 % 3376025 0.55 % 3351793 0.55 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23212250 1.91 % 8913005 1.46 % 14299245 2.35 %
Bisulfite_reads C2T 611096893 50.22 % 306900641 50.44 % 304196252 50.00 %
Bisulfite_reads G2A 582548501 47.87 % 292615176 48.09 % 289933325 47.65 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 503144678
Average Unique 82.70 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 48317311164 38.93 % 18424008232 29.69 % 29893302932 48.17 %
Base Counts Overall C 13229067242 10.66 % 549541667 0.89 % 12679525575 20.43 %
Base Counts Overall G 13382551090 10.78 % 12859361297 20.72 % 523189793 0.84 %
Base Counts Overall T 47929418011 38.62 % 29615000339 47.72 % 18314417672 29.51 %
Base Counts Overall N 1261132181 1.02 % 611828309 0.99 % 649303872 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992177662183972
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 579814747



Mapping Quality

Mapping Quality Histogram
S01GU9.Bisulfite-Seq.DNA_Methylation.EGAX00001345146_12.mapq.png



Read Length

Read Length Reads
101 608428822
101 608428822



Insert Size Plot

Insert Size Histogram
S01GU9.Bisulfite-Seq.DNA_Methylation.EGAX00001345146_12.isize.png