/EXTERNAL BLUEPRINT/mapping_coverage/K006411_12_lane_gembs
BACK
SAMPLE K006411_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1182198900 |
100% |
108637954257 |
100% |
| Mapped |
1170234528 |
98.99 % |
107429552685 |
98.89 % |
| Passed |
997541165 |
84.38 % |
89987523022 |
82.83 % |
| NotPassed |
172693363 |
14.61 % |
17442029663 |
16.06 % |
| |
|
|
|
|
| LowMAPQ |
148795722 |
12.59 % |
15028367922 |
13.83 % |
| MateUnmapped |
11964372 |
1.01 % |
1208401572 |
1.11 % |
| Duplicate |
4719863 |
0.40 % |
476706163 |
0.44 % |
| BadOrientation |
14 |
0.00 % |
1414 |
0.00 % |
| LargeInsertSize |
4336 |
0.00 % |
437936 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19173428 |
1.62 % |
1936516228 |
1.78 % |
| Unmapped |
11964372 |
1.01 % |
1208401572 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
100743925105 |
100% |
| Passed |
84309175306 |
83.69 % |
| Trimmed |
4405750573 |
4.37 % |
| Clipped |
116421556 |
0.12 % |
| Overlapping |
10639980527 |
10.56 % |
| LowQuality |
1272597143 |
1.26 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |