/EXTERNAL BLUEPRINT/methylation/K006411_12_lane_gembs

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SAMPLE K006411_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26853961 23727686 88.36 %
NonRefCpG 254492 189802 74.58 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006411_12_lane_gembs_coverage_refCpG.png ./IMG//K006411_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006411_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006411_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006411_12_lane_gembs_quality_refcpg.png ./IMG//K006411_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006411_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9218749 17.40 % 8011211 16.39 % 71818 14.77 % 47161 11.85 %
Intermediate (0.3-0.7) 10752458 20.30 % 9478785 19.40 % 118921 24.46 % 89679 22.53 %
Methylated (0.7-1) 33007421 62.30 % 31378353 64.21 % 295494 60.77 % 261173 65.62 %
Median Methylation 0.800 0.820 0.790 0.820