/EXTERNAL BLUEPRINT/K006391_K006404_25_lane_gembs/UMCG00016.Bisulfite-Seq.DNA_Methylation.EGAX00001345076_10
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 869942980 | 100.00 % | 434971490 | 100.00 % | 434971490 | 100.00 % |
| General Reads | 849126612 | 97.61 % | 426000384 | 97.94 % | 423126228 | 97.28 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4638351 | 0.53 % | 2325383 | 0.53 % | 2312968 | 0.53 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 16178017 | 1.86 % | 6645723 | 1.53 % | 9532294 | 2.19 % |
| Bisulfite_reads C2T | 437252346 | 50.26 % | 219346420 | 50.43 % | 217905926 | 50.10 % |
| Bisulfite_reads G2A | 416512617 | 47.88 % | 208979347 | 48.04 % | 207533270 | 47.71 % |
| Concept | Value |
|---|---|
| Unique Fragments | 359932368 |
| Average Unique | 82.75 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 34222653744 | 38.57 % | 13094986346 | 29.52 % | 21127667398 | 47.62 % |
| Base Counts Overall C | 9704458883 | 10.94 % | 468463475 | 1.06 % | 9235995408 | 20.82 % |
| Base Counts Overall G | 9759426570 | 11.00 % | 9312134198 | 20.99 % | 447292372 | 1.01 % |
| Base Counts Overall T | 34162440907 | 38.50 % | 21050668004 | 47.45 % | 13111772903 | 29.55 % |
| Base Counts Overall N | 885203856 | 1.00 % | 440839957 | 0.99 % | 444363899 | 1.00 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9988113328520594 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 414840125 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 434971490 |
| 101 | 434971490 |
| Insert Size Histogram |
|---|
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