/EXTERNAL BLUEPRINT/mapping_coverage/K006391_K006404_25_lane_gembs
BACK
SAMPLE K006391_K006404_25_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1993074511 |
100% |
179202353272 |
100% |
| Mapped |
1974529888 |
99.07 % |
177329346349 |
98.95 % |
| Passed |
1598854665 |
80.22 % |
139386148826 |
77.78 % |
| NotPassed |
375675223 |
18.85 % |
37943197523 |
21.17 % |
| |
|
|
|
|
| LowMAPQ |
321580994 |
16.13 % |
32479680394 |
18.12 % |
| MateUnmapped |
18544623 |
0.93 % |
1873006923 |
1.05 % |
| Duplicate |
20520618 |
1.03 % |
2072582418 |
1.16 % |
| BadOrientation |
68 |
0.00 % |
6868 |
0.00 % |
| LargeInsertSize |
33700 |
0.00 % |
3403700 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
33539843 |
1.68 % |
3387524143 |
1.89 % |
| Unmapped |
18544623 |
0.93 % |
1873006923 |
1.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
161474961899 |
100% |
| Passed |
131078148363 |
81.18 % |
| Trimmed |
6916829249 |
4.28 % |
| Clipped |
446376749 |
0.28 % |
| Overlapping |
21642436324 |
13.40 % |
| LowQuality |
1391171214 |
0.86 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |