/EXTERNAL ENCODE/K005735_K005710_2_lane_gembs

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SAMPLE K005735_K005710_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3180162232 100.00 % 1590081116 100.00 % 1590081116 100.00 %
General Reads 3125464864 98.28 % 1570863049 98.79 % 1554601815 97.77 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11844169 0.37 % 5955114 0.37 % 5889055 0.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 42853199 1.35 % 13262953 0.83 % 29590246 1.86 %
Bisulfite_reads C2T 1594884521 50.15 % 801255708 50.39 % 793628813 49.91 %
Bisulfite_reads G2A 1542424512 48.50 % 775562455 48.78 % 766862057 48.23 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1205289616
Average Unique 75.80 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 186219228252 38.78 % 76097668698 31.69 % 110121559554 45.86 %
Base Counts Overall C 51169984366 10.66 % 2637412113 1.10 % 48532572253 20.21 %
Base Counts Overall G 51309047566 10.68 % 48128832241 20.05 % 3180215325 1.32 %
Base Counts Overall T 188281201966 39.21 % 111631748690 46.49 % 76649453276 31.92 %
Base Counts Overall N 3225034882 0.67 % 1606586774 0.67 % 1618448108 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9898953293191256
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1340018458



Mapping Quality

Mapping Quality Histogram
K005735_K005710_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K005735_K005710_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
ENCFF751KHK_150bp_chastity
ENCFF953ELH_150bp_chastity